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Prof. Yannick RONDELEZ (University of Tokyo): Building molecular dissipative circuits with DNA
May 26, 2015 @ 4:30 pm - 6:00 pm
Reaction networks of precise topology and kinetic features underlie all cellular functions and computations. Reproducing these non-linear chemical systems in vitro requires a programmable chemical toolbox: a set of generic reactions that can be rewired, cascaded, looped at will, so as to fulfill a particular dynamical function.
I will discuss such a set, based on small synthetic DNA strands used to constrain enzymatic reactivity along user-defined kinetic paths. Bi- and multi-stable, relaxation oscillators or the first predator-prey chemical ecosystem have been experimentally constructed. These systems use mild chemical conditions and can be used as modular building blocks to build larger molecular organizations. For example, in a spatially extended reactor, we observe traveling fronts and waves of DNA species; in emulsion of micro-droplets we can directly visualize the full bifurcation diagram of a particular design or circuit.
We anticipate that this approach will open new avenues for the bottom-up construction of dissipative chemical behaviors in both time and space and the study of their feature-function relationships.
Figure caption: fluorescently barcoded micro-droplets running DNA molecular programs.